NAR 2007 - PDF Preprint Papers

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2007

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WoLF PSORT: protein localization predictor

13 years 4 months ago

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WoLF PSORT is an extension of the PSORT II program for protein subcellular location prediction. WoLF PSORT converts protein amino acid sequences into numerical localization featur...

Paul Horton, Keun-Joon Park, Takeshi Obayashi, Nao...

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Id	Views	Title	Status

1	260	WoLF PSORT: protein localization predictor	claim
2	235	PAR-3D: a server to predict protein active site residues	claim
3	216	SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas	claim
4	210	MIPSPlantsDB - plant database resource for integrative and comparative plant genome research	claim
5	155	Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research	claim
6	155	AthaMap web tools for the analysis and identification of co-regulated genes	claim
7	153	PROMALS web server for accurate multiple protein sequence alignments	claim
8	152	COMPASS server for remote homology inference	claim
9	150	CellCircuits: a database of protein network models	claim
10	149	UniHI: an entry gate to the human protein interactome	claim
11	145	HMDB: the Human Metabolome Database	claim
12	145	FLAN: a web server for influenza virus genome annotation	claim
13	145	Primer3Plus, an enhanced web interface to Primer3	claim
14	136	DBAli tools: mining the protein structure space	claim
15	135	g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments	claim
16	132	TRED: a transcriptional regulatory element database, new entries and other development	claim
17	132	Expanded protein information at SGD: new pages and proteome browser	claim
18	131	Snap: an integrated SNP annotation platform	claim
19	131	CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats	claim
20	130	The SLiMDisc server: short, linear motif discovery in proteins	claim
21	129	taveRNA: a web suite for RNA algorithms and applications	claim
22	128	Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis	claim
23	127	The Universal Protein Resource (UniProt)	claim
24	124	EVEREST: a collection of evolutionary conserved protein domains	claim
25	124	The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures	claim
26	122	The Online Bioinformatics Resources Collection at the University of Pittsburgh Health Sciences Library System - a one-stop gateway to online bioinformatics databases and software tools	claim
27	121	WormBase: new content and better access	claim
28	120	TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method	claim
29	117	FGF: A web tool for Fishing Gene Family in a whole genome database	claim
30	116	Protein knot server: detection of knots in protein structures	claim
31	115	DroSpeGe: rapid access database for new Drosophila species genomes	claim
32	115	PReMod: a database of genome-wide mammalian cis-regulatory module predictions	claim
33	113	The UCSC genome browser database: update 2007	claim
34	111	PEDANT genome database: 10 years online	claim
35	111	Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together	claim
36	109	GeneTrees: a phylogenomics resource for prokaryotes	claim
37	106	INFO-RNA - a server for fast inverse RNA folding satisfying sequence constraints	claim
38	105	Onto-Tools: new additions and improvements in 2006	claim
39	103	InSatDb: a microsatellite database of fully sequenced insect genomes	claim
40	102	ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ	claim
41	100	CSRDB: a small RNA integrated database and browser resource for cereals	claim
42	100	PIC: Protein Interactions Calculator	claim
43	99	PATRIC: The VBI PathoSystems Resource Integration Center	claim
44	97	Gene Aging Nexus: a web database and data mining platform for microarray data on aging	claim
45	96	DOMAC: an accurate, hybrid protein domain prediction server	claim
46	96	New developments in the InterPro database	claim
47	95	VisANT 3.0: new modules for pathway visualization, editing, prediction and construction	claim
48	95	SplicePort - An interactive splice-site analysis tool	claim
49	91	SuperHapten: a comprehensive database for small immunogenic compounds	claim
50	91	RNABindR: a server for analyzing and predicting RNA-binding sites in proteins	claim
51	90	The SUPERFAMILY database in 2007: families and functions	claim
52	90	PigGIS: Pig Genomic Informatics System	claim
53	85	The TIGR Rice Genome Annotation Resource: improvements and new features	claim
54	84	The Multi-Q web server for multiplexed protein quantitation	claim
55	82	Towards pathogenomics: a web-based resource for pathogenicity islands	claim
56	81	Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation	claim
57	77	CYCLONET - an integrated database on cell cycle regulation and carcinogenesis	claim
58	76	VectorBase: a home for invertebrate vectors of human pathogens	claim
59	75	ApiDB: integrated resources for the apicomplexan bioinformatics resource center	claim
60	72	NATsDB: Natural Antisense Transcripts DataBase	claim
61	71	Web Services at the European Bioinformatics Institute	claim
62	70	probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features 2007	claim
63	69	The HIV positive selection mutation database	claim
64	69	Ensembl 2007	claim
65	69	PathExpress: a web-based tool to identify relevant pathways in gene expression data	claim
66	67	Mouse Phenome Database (MPD)	claim
67	66	A Protein Classification Benchmark collection for machine learning	claim
68	65	STRING 7 - recent developments in the integration and prediction of protein interactions	claim
69	62	MolProbity: all-atom contacts and structure validation for proteins and nucleic acids	claim
70	62	RADAR: a web server for RNA data analysis and research	claim
71	62	pKNOT: the protein KNOT web server	claim
72	50	PIDD: database for Protein Inter-atomic Distance Distributions	claim

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