RECOMB 2001 - PDF Preprint Papers

RECOMB 2001 Annual Conference on Research in Computational Molecular Biology

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RECOMB
2001
Springer

164views Computational Biology» more RECOMB 2001»

Finding motifs using random projections

14 years 4 months ago

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motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...

Jeremy Buhler, Martin Tompa

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Id	Views	Title	Status

1	164	Finding motifs using random projections	claim
2	164	Context-specific Bayesian clustering for gene expression data	claim
3	153	Algorithms for phylogenetic footprinting	claim
4	149	Geometric algorithms for the analysis of 2D-electrophoresis gels	claim
5	144	Applications of generalized pair hidden Markov models to alignment and gene finding problems	claim
6	136	101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem	claim
7	136	A new approach to fragment assembly in DNA sequencing	claim
8	133	Algorithms for identifying protein cross-links via tandem mass spectrometry	claim
9	133	Large scale sequencing by hybridization	claim
10	132	Comparing sequence scaffolds	claim
11	129	DNA segmentation as a model selection process	claim
12	129	Extracting structural information using time-frequency analysis of protein NMR data	claim
13	128	Class discovery in gene expression data	claim
14	126	Predicting the beta-helix fold from protein sequence data	claim
15	126	Analysis techniques for microarray time-series data	claim
16	124	The greedy path-merging algorithm for sequence assembly	claim
17	119	Edit distance between two RNA structures	claim
18	118	Using motion planning to study protein folding pathways	claim
19	113	A new approach to sequence comparison: normalized sequence alignment	claim
20	113	Gene functional classification from heterogeneous data	claim
21	110	Fast recovery of evolutionary trees with thousands of nodes	claim
22	110	Towards predicting coiled-coil protein interactions	claim
23	102	Gene-finding via tandem mass spectrometry	claim
24	95	A structural EM algorithm for phylogenetic inference	claim
25	94	Optimal sequencing by hybridization in rounds	claim

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