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SOCO
2008
Springer

GP on SPMD parallel graphics hardware for mega Bioinformatics data mining

10 years 3 months ago
GP on SPMD parallel graphics hardware for mega Bioinformatics data mining
Abstract We demonstrate a SIMD C++ genetic programming system on a single 128 node parallel nVidia GeForce 8800 GTX GPU under RapidMind's GPGPU Linux software by predicting ten year+ outcome of breast cancer from a dataset containing a million inputs. NCBI GEO GSE3494 contains hundreds of Affymetrix HG-U133A and HG-U133B GeneChip biopsies. Multiple GP runs each with a population of 5 million programs winnow useful variables from the chaff at more than 500 million GPops per second. Sources available via FTP.
William B. Langdon, Andrew P. Harrison
Added 15 Dec 2010
Updated 15 Dec 2010
Type Journal
Year 2008
Where SOCO
Authors William B. Langdon, Andrew P. Harrison
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