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2008

Modeling Biological Networks by Action Languages via Answer Set Programming

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Modeling Biological Networks by Action Languages via Answer Set Programming
We describe an approach to modeling biological networks by action languages via answer set programming. To this end, we propose an action language for modeling biological networks, building on previous work by Baral et al. We introduce its syntax and semantics along with a translation into answer set programming, an efficient Boolean Constraint Programming Paradigm. Finally, we describe one of its applications, namely, the sulfur starvation response-pathway of the model plant Arabidopsis thaliana and sketch the functionality of our system and its usage.
Steve Dworschak, Susanne Grell, Victoria J. Nikifo
Added 09 Dec 2010
Updated 09 Dec 2010
Type Journal
Year 2008
Where CONSTRAINTS
Authors Steve Dworschak, Susanne Grell, Victoria J. Nikiforova, Torsten Schaub, Joachim Selbig
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