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IJIT
2004

Parallezation Protein Sequence Similarity Algorithms using Remote Method Interface

11 years 6 months ago
Parallezation Protein Sequence Similarity Algorithms using Remote Method Interface
One of the major problems in genomic field is to perform sequence comparison on DNA and protein sequences. Executing sequence comparison on the DNA and protein data is a computationally intensive task. Sequence comparison is the basic step for all algorithms in protein sequences similarity. Parallel computing is an attractive solution to provide the computational power needed to speedup the lengthy process of the sequence comparison. Our main research is to enhance the protein sequence algorithm using dynamic programming method. In our approach, we parallelize the dynamic programming algorithm using multithreaded program to perform the sequence comparison and also developed a distributed protein database among many PCs using Remote Method Interface (RMI). As a result, we showed how different sizes of protein sequences data and computation of scoring matrix of these protein sequence on different number of processors affected the processing time and speed, as oppose to sequential process...
Mubarak Saif Mohsen, Zurinahni Zainol, Rosalina Ab
Added 31 Oct 2010
Updated 31 Oct 2010
Type Conference
Year 2004
Where IJIT
Authors Mubarak Saif Mohsen, Zurinahni Zainol, Rosalina Abdul Salam, Wahidah Husain
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