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» A Case for Automated Debugging Using Data Structure Repair
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BMCBI
2007
102views more  BMCBI 2007»
13 years 5 months ago
Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Background: The number of algorithms available to predict ligand-protein interactions is large and ever-increasing. The number of test cases used to validate these methods is usua...
Luis A. Diago, Persy Morell, Longendri Aguilera, E...
BMCBI
2008
112views more  BMCBI 2008»
13 years 5 months ago
A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regul
Background: Innumerable biological investigations require comparing collections of molecules, cells or organisms to one another with respect to one or more of their properties. Al...
Arnab Bhattacharya, Sasha Levy, Adria LeBoeuf, Mic...
TPHOL
2009
IEEE
13 years 12 months ago
A Formalisation of Smallfoot in HOL
In this paper a general framework for separation logic inside the HOL theorem prover is presented. This framework is based on Abeparation Logic. It contains a model of an abstract,...
Thomas Tuerk
BMCBI
2008
104views more  BMCBI 2008»
13 years 5 months ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
AAAI
2010
13 years 6 months ago
Multi-Agent Plan Recognition: Formalization and Algorithms
Multi-Agent Plan Recognition (MAPR) seeks to identify the dynamic team structures and team behaviors from the observations of the activity-sequences of a set of intelligent agents...
Bikramjit Banerjee, Landon Kraemer, Jeremy Lyle