Top-k approximate querying on string collections is an important data analysis tool for many applications, and it has been exhaustively studied. However, the scale of the problem ...
— We consider the approximate string membership checking (ASMC) problem of extracting all the strings or substrings in a document that approximately match some string in a given ...
Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware utilization. Many impl...
We present a new algorithm for generating super condensed neighbourhoods. Super condensed neighbourhoods have recently been presented as the minimal set of words that represent a p...
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...