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TCBB
2010
114views more  TCBB 2010»
13 years 3 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
SIGMOD
2008
ACM
142views Database» more  SIGMOD 2008»
14 years 5 months ago
Cost-based variable-length-gram selection for string collections to support approximate queries efficiently
Approximate queries on a collection of strings are important in many applications such as record linkage, spell checking, and Web search, where inconsistencies and errors exist in...
Xiaochun Yang, Bin Wang, Chen Li
CORR
2010
Springer
200views Education» more  CORR 2010»
13 years 5 months ago
Unified Compression-Based Acceleration of Edit-Distance Computation
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
SIGIR
1998
ACM
13 years 9 months ago
Fast Searching on Compressed Text Allowing Errors
Abstract We present a fast compression and decompression scheme for natural language texts that allows e cient and exible string matching by searching the compressed text directly....
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...
ICIP
2006
IEEE
14 years 6 months ago
A New Method for Boundary-Based Shape Matching and Retrieval
This paper presents a novel method for efficient boundary based shapes matching and retrieval in presence of occlusion. In this method, the geometric and topological information o...
Minh-Son Dao, Raffaele de Amicis