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» A Faster Algorithm for Detecting Network Motifs
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BMCBI
2007
148views more  BMCBI 2007»
13 years 4 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
BMCBI
2006
202views more  BMCBI 2006»
13 years 4 months ago
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Background: The learning of global genetic regulatory networks from expression data is a severely under-constrained problem that is aided by reducing the dimensionality of the sea...
David J. Reiss, Nitin S. Baliga, Richard Bonneau
GECCO
2007
Springer
158views Optimization» more  GECCO 2007»
13 years 11 months ago
A novel generative encoding for exploiting neural network sensor and output geometry
A significant problem for evolving artificial neural networks is that the physical arrangement of sensors and effectors is invisible to the evolutionary algorithm. For example,...
David B. D'Ambrosio, Kenneth O. Stanley
SIGCOMM
2009
ACM
13 years 11 months ago
A virtual network mapping algorithm based on subgraph isomorphism detection
Assigning the resources of a virtual network to the components of a physical network, called Virtual Network Mapping, plays a central role in network virtualization. Existing appr...
Jens Lischka, Holger Karl
BMCBI
2005
126views more  BMCBI 2005»
13 years 4 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois