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    » A Framework for Modeling DNA Based Molecular Systems
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    JCB
    1998
    129views more  JCB 1998»
    A Sticker-Based Model for DNA Computation
    13 years 5 months ago
    A Sticker-Based Model for DNA Computation
    Download  cs.nyu.edu
    We introduce a new model of molecular computation that we call the sticker model. Like many previous proposals it makes use of DNA strands as the physical substrate in which infor...
    Sam T. Roweis, Erik Winfree, Richard Burgoyne, Nic...
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    BMCBI
    2007
    159views more  BMCBI 2007»
    Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
    13 years 5 months ago
    Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype
    Download  www.biomedcentral.com
    Background: A finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level. Results: We ...
    Israel Mark Martínez-Pérez, Gong Zha...
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    BMCBI
    2007
    130views more  BMCBI 2007»
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
    13 years 5 months ago
    A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
    Download  www.biomedcentral.com
    Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
    Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
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    CLEIEJ
    2006
    88views more  CLEIEJ 2006»
    A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
    13 years 5 months ago
    A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
    Download  www.clei.cl
    Concurrent process calculi are powerful formalisms for modelling concurrent systems. The mathematical style underlying process calculi allow to both model and verify properties of...
    Carlos Olarte, Camilo Rueda
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    JCC
    2008
    138views more  JCC 2008»
    Circular dichroism enhancement in large DNA aggregates simulated by a generalized oscillator model
    13 years 5 months ago
    Circular dichroism enhancement in large DNA aggregates simulated by a generalized oscillator model
    Download  hanicka.uochb.cas.cz
    Abstract: An increased circular dichroism (CD) signal of large molecular aggregates formed upon DNA condensation was observed a long time ago, and is often referred to as w-CD. The...
    Valery Andrushchenko, Petr Bour
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