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» A Functional Programming Approach to Deductive Databases
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BMCBI
2004
158views more  BMCBI 2004»
13 years 5 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
BMCBI
2007
102views more  BMCBI 2007»
13 years 5 months ago
FlexOracle: predicting flexible hinges by identification of stable domains
Background: Protein motions play an essential role in catalysis and protein-ligand interactions, but are difficult to observe directly. A substantial fraction of protein motions i...
Samuel Flores, Mark Gerstein
KDD
2003
ACM
142views Data Mining» more  KDD 2003»
14 years 5 months ago
Frequent-subsequence-based prediction of outer membrane proteins
A number of medically important disease-causing bacteria (collectively called Gram-negative bacteria) are noted for the extra "outer" membrane that surrounds their cell....
Rong She, Fei Chen 0002, Ke Wang, Martin Ester, Je...
KDD
2010
ACM
245views Data Mining» more  KDD 2010»
13 years 7 months ago
Learning incoherent sparse and low-rank patterns from multiple tasks
We consider the problem of learning incoherent sparse and lowrank patterns from multiple tasks. Our approach is based on a linear multi-task learning formulation, in which the spa...
Jianhui Chen, Ji Liu, Jieping Ye
BMCBI
2007
124views more  BMCBI 2007»
13 years 5 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...