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BMCBI
2004
97views more  BMCBI 2004»
13 years 5 months ago
Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage pattern
Background: Oligonucleotide frequencies were shown to be conserved signatures for bacterial genomes, however, the underlying constraints have yet not been resolved in detail. In t...
Oleg N. Reva, Burkhard Tümmler
IR
2010
13 years 3 months ago
Learning to rank with (a lot of) word features
In this article we present Supervised Semantic Indexing (SSI) which defines a class of nonlinear (quadratic) models that are discriminatively trained to directly map from the word...
Bing Bai, Jason Weston, David Grangier, Ronan Coll...
IANDC
2011
148views more  IANDC 2011»
13 years 7 days ago
Building species trees from larger parts of phylogenomic databases
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...
Celine Scornavacca, Vincent Berry, Vincent Ranwez