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» A Hidden Markov Model for de Novo Peptide Sequencing
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JAIR
2006
138views more  JAIR 2006»
13 years 5 months ago
Logical Hidden Markov Models
Logical hidden Markov models (LOHMMs) upgrade traditional hidden Markov models to deal with sequences of structured symbols in the form of logical atoms, rather than flat characte...
Kristian Kersting, Luc De Raedt, Tapani Raiko
JCB
2007
144views more  JCB 2007»
13 years 5 months ago
Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
Analysis of biopolymer sequences and structures generally adopts one of two approaches: use of detailed biophysical theoretical models of the system with experimentally-determined...
Scott C. Schmidler, Joseph E. Lucas, Terrence G. O...
BMCBI
2007
98views more  BMCBI 2007»
13 years 5 months ago
Duration learning for analysis of nanopore ionic current blockades
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties, with potential implications ...
Alexander G. Churbanov, Carl Baribault, Stephen Wi...
ICPR
2008
IEEE
14 years 7 months ago
A new HMM training and testing scheme
One of disadvantages of Hidden Markov Models (HMMs) is its low resistance to unexpected noises among observation sequences. Unexpected noises in a sequence usually "break&quo...
Albert Hung-Ren Ko, Alceu de Souza Britto Jr., Rob...
BMCBI
2008
101views more  BMCBI 2008»
13 years 6 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...