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CP
2003
Springer
13 years 11 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
NAR
2006
129views more  NAR 2006»
13 years 5 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
CPAIOR
2010
Springer
13 years 9 months ago
Hybrid Methods for the Multileaf Collimator Sequencing Problem
Abstract. The multileaf collimator sequencing problem is an important component of the effective delivery of intensity modulated radiotherapy used in the treatment of cancer. The p...
Hadrien Cambazard, Eoin O'Mahony, Barry O'Sullivan
AINA
2006
IEEE
13 years 11 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
BMCBI
2005
134views more  BMCBI 2005»
13 years 5 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001