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BMCBI
2004
323views more  BMCBI 2004»
13 years 5 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
FOSSACS
2006
Springer
13 years 9 months ago
Reversing Algebraic Process Calculi
Reversible computation has a growing number of promising application areas such as the modelling of biochemical systems, program debugging and testing, and even programming languag...
Iain C. C. Phillips, Irek Ulidowski
BMCBI
2010
126views more  BMCBI 2010»
13 years 2 months ago
Systematic integration of experimental data and models in systems biology
Background: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction ...
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Sp...
ICTAI
2008
IEEE
13 years 11 months ago
The System BioC for Reasoning about Biological Models in Action Language C
We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
Steve Dworschak, Torsten Grote, Arne König, T...
JIB
2007
136views more  JIB 2007»
13 years 5 months ago
SABIO-RK: A data warehouse for biochemical reactions and their kinetics
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions...
Olga Krebs, Martin Golebiewski, Renate Kania, Saqi...