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BMEI
2008
IEEE
13 years 11 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
CVPR
2009
IEEE
15 years 13 days ago
Global Optimization for Alignment of Generalized Shapes
In this paper, we introduce a novel algorithm to solve global shape registration problems. We use gray-scale “images” to represent source shapes, and propose a novel twocompo...
Hongsheng Li (Lehigh University), Tian Shen (Lehig...
GECCO
2005
Springer
112views Optimization» more  GECCO 2005»
13 years 11 months ago
A multiple objective evolutionary algorithm for multiple sequence alignment
The problem of multiple sequence alignment is important for bioinformatics. This problem is widely studied and a popular tool to solve this problem is Clustal X. This work introdu...
Pasut Seeluangsawat, Prabhas Chongstitvatana
BMCBI
2004
177views more  BMCBI 2004»
13 years 5 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
HPCC
2007
Springer
13 years 9 months ago
A New Method for Multi-objective TDMA Scheduling in Wireless Sensor Networks Using Pareto-Based PSO and Fuzzy Comprehensive Judg
In wireless sensor networks with many-to-one transmission mode, a multi-objective TDMA (Time Division Multiple Access) scheduling model is presented, which concerns about the packe...
Tao Wang, Zhiming Wu, Jianlin Mao