45 search results - page 2 / 9 » A Multithreaded Parallel Implementation of a Dynamic Program... |
RIVF
2008
13 years 5 months ago
2008
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
IPPS
2005
IEEE
13 years 10 months ago
2005
IEEE
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
ISHPC
2003
Springer
13 years 9 months ago
2003
Springer
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
ICSE
2010
IEEE-ACM
13 years 6 months ago
2010
IEEE-ACM
The trend towards multicore processors and graphic processing units is increasing the need for software that can take advantage of parallelism. Writing correct parallel programs u...
IPPS
2003
IEEE
13 years 9 months ago
2003
IEEE
The characteristics of irregular algorithms make a parallel implementation difficult, especially for PC clusters or clusters of SMPs. These characteristics may include an unpredi...