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CSB
2003
IEEE
152views Bioinformatics» more  CSB 2003»
13 years 9 months ago
A Parallel Genetic Algorithm for Physical Mapping of Chromosomes
Physical map reconstruction in the presence of errors is a central problem in genetics of high computational complexity. A parallel genetic algorithm for a maximum likelihood esti...
Suchendra M. Bhandarkar, Jinling Huang, Jonathan A...
IPPS
2000
IEEE
13 years 9 months ago
Parallel Computation for Chromosome Reconstruction on a Cluster of Workstations
Reconstructing a physical map of a chromosome from a genomic library presents a central computational problem in genetics. Physical map reconstruction in the presence of errors is...
Suchendra M. Bhandarkar, Salem Machaka, Sanjay She...
ISCIS
2003
Springer
13 years 9 months ago
Gene Level Concurrency in Genetic Algorithms
This study describes an alternative concurrency approach in genetic algorithms. Inspiring from implicit parallelism in a physical chromosome, a vertical concurrency is introduced. ...
Onur Tolga Sehitoglu, Göktürk Ü&cce...
ICNC
2005
Springer
13 years 10 months ago
Parallel Genetic Algorithms on Programmable Graphics Hardware
Abstract. Parallel genetic algorithms are usually implemented on parallel machines or distributed systems. This paper describes how finegrained parallel genetic algorithms can be ...
Qizhi Yu, Chongcheng Chen, Zhigeng Pan
BMCBI
2010
161views more  BMCBI 2010»
13 years 1 months ago
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Background: Physical maps are the substrate of genome sequencing and map-based cloning and their construction relies on the accurate assembly of BAC clones into large contigs that...
Zeev Frenkel, Etienne Paux, David I. Mester, Cathe...