18 search results - page 1 / 4 » A Parallel Programming Framework for Multi-core DNA Sequence... |
CISIS
2010
IEEE
13 years 10 months ago
2010
IEEE
—A new parallel programming framework for DNA sequence alignment in homogeneous multi-core processor architectures is proposed. Contrasting with traditional coarse-grained parall...
ICPP
2003
IEEE
13 years 10 months ago
2003
IEEE
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
IPPS
2003
IEEE
13 years 10 months ago
2003
IEEE
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
BMCBI
2010
13 years 4 months ago
2010
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
BMCBI
2005
13 years 4 months ago
2005
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...