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» A Performance Comparison of Sort and Scan Libraries for GPUs
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EGH
2007
Springer
13 years 11 months ago
Scan primitives for GPU computing
The scan primitives are powerful, general-purpose data-parallel primitives that are building blocks for a broad range of applications. We describe GPU implementations of these pri...
Shubhabrata Sengupta, Mark Harris, Yao Zhang, John...
ICMCS
2008
IEEE
208views Multimedia» more  ICMCS 2008»
13 years 12 months ago
Fast computation of general Fourier Transforms on GPUS
We present an implementation of general FFTs for graphics processing units (GPUs). Unlike most existing GPU FFT implementations, we handle both complex and real data of any size t...
Brandon Lloyd, Chas Boyd, Naga K. Govindaraju
BMCBI
2011
12 years 9 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
ICCS
2005
Springer
13 years 11 months ago
Comparison of Nonlinear Conjugate-Gradient Methods for Computing the Electronic Properties of Nanostructure Architectures
In this article we report on our efforts to test and expand the current state-of-the-art in eigenvalue solvers applied to the field of nanotechnology. We singled out the nonlinea...
Stanimire Tomov, Julien Langou, Andrew Canning, Li...
HPCC
2007
Springer
13 years 11 months ago
Adaptive Computation of Self Sorting In-Place FFTs on Hierarchical Memory Architectures
Computing ”in-place and in-order”FFT poses a very difficult problem on hierarchical memory architectures where data movement can seriously degrade the performance. In this pape...
Ayaz Ali, S. Lennart Johnsson, Jaspal Subhlok