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» A Perspective on Inductive Databases
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BMCBI
2007
152views more  BMCBI 2007»
13 years 5 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
SIGPLAN
2008
13 years 5 months ago
Single global lock semantics in a weakly atomic STM
As memory transactions have been proposed as a language-level replacement for locks, there is growing need for well-defined semantics. In contrast to database transactions, transa...
Vijay Menon, Steven Balensiefer, Tatiana Shpeisman...
BMCBI
2005
95views more  BMCBI 2005»
13 years 5 months ago
Oligomeric protein structure networks: insights into protein-protein interactions
Background: Protein-protein association is essential for a variety of cellular processes and hence a large number of investigations are being carried out to understand the princip...
K. V. Brinda, Saraswathi Vishveshwara
BMCBI
2005
97views more  BMCBI 2005»
13 years 5 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
BMCBI
2004
158views more  BMCBI 2004»
13 years 5 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...