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RECOMB
2009
Springer
14 years 5 months ago
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series
Abstract. Understanding the regulatory mechanisms that are responsible for an organism's response to environmental changes is an important question in molecular biology. A fir...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
GCB
2009
Springer
141views Biometrics» more  GCB 2009»
13 years 11 months ago
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series
: A wealth of time series of microarray measurements have become available over recent years. Several two-sample tests for detecting differential gene expression in these time seri...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
BMCBI
2011
12 years 8 months ago
A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
Background: The analysis of gene expression from time series underpins many biological studies. Two basic forms of analysis recur for data of this type: removing inactive (quiet) ...
Alfredo A. Kalaitzis, Neil D. Lawrence
BMCBI
2008
148views more  BMCBI 2008»
13 years 4 months ago
BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments
Summary: BATS is a user-friendly software for Bayesian Analysis of Time Series microarray experiments based on the novel, truly functional and fully Bayesian approach proposed in ...
Claudia Angelini, Luisa Cutillo, Daniela De Candit...
BMCBI
2005
178views more  BMCBI 2005»
13 years 4 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...