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» A Simple Calculus for Proteins and Cells
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ENTCS
2007
82views more  ENTCS 2007»
13 years 4 months ago
A Simple Calculus for Proteins and Cells
The use of process calculi to represent biological systems has led to the design of different formalisms such as brane calculi and κ-calculus. Both have proved to be useful to m...
Cosimo Laneve, Fabien Tarissan
ECAL
2005
Springer
13 years 10 months ago
Biological Development of Cell Patterns: Characterizing the Space of Cell Chemistry Genetic Regulatory Networks
Abstract. Genetic regulatory networks (GRNs) control gene expression and are responsible for establishing the regular cellular patterns that constitute an organism. This paper intr...
Nicholas S. Flann, Jing Hu, Mayank Bansal, Vinay P...
DAGSTUHL
2006
13 years 6 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards
ACSD
2008
IEEE
130views Hardware» more  ACSD 2008»
13 years 11 months ago
BAM: BioAmbient machine
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...
TLCA
2005
Springer
13 years 10 months ago
L3: A Linear Language with Locations
We explore foundational typing support for strong updates — updating a memory cell to hold values of unrelated types at different points in time. We present a simple, but expres...
Greg Morrisett, Amal J. Ahmed, Matthew Fluet