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BMCBI
2004
323views more  BMCBI 2004»
13 years 5 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
BIOSYSTEMS
2008
102views more  BIOSYSTEMS 2008»
13 years 5 months ago
A computational model for telomere-dependent cell-replicative aging
Telomere shortening provides a molecular basis for the Hayflick limit. Recent data suggest that telomere shortening also influence mitotic rate. We propose a stochastic growth mod...
R. D. Portugal, M. G. P. Land, Benar Fux Svaiter
FMSB
2008
138views Formal Methods» more  FMSB 2008»
13 years 7 months ago
Combining Intra- and Inter-cellular Dynamics to Investigate Intestinal Homeostasis
Abstract. This paper reports on the multi-scale modelling of an intestinal crypt cellular structure coupled with Wnt signalling. Using formal modelling techniques based on the stoc...
Oksana Tymchyshyn, Marta Z. Kwiatkowska
JUCS
2008
139views more  JUCS 2008»
13 years 5 months ago
Parallel Strategies for Stochastic Evolution
: This paper discusses the parallelization of Stochastic Evolution (StocE) metaheuristic, for a distributed parallel environment. VLSI cell placement is used as an optimization pro...
Sadiq M. Sait, Khawar S. Khan, Mustafa Imran Ali