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» A Stochastic Semantics for BioAmbients
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PACT
2007
Springer
13 years 10 months ago
A Stochastic Semantics for BioAmbients
We consider BioAmbients, a calculus for specifying biological entities and for simulating and analysing their behaviour. We extend BioAmbients to take quantitative information into...
Linda Brodo, Pierpaolo Degano, Corrado Priami
ENTCS
2008
99views more  ENTCS 2008»
13 years 4 months ago
Modelling Intracellular Fate of FGF Receptors With BioAmbients
In this paper we consider a model of different sorting of receptors for Fibroblast Growth Factor via the endocytotic pathway. In order to accurately model the relocation in the di...
Steffen van Bakel, Ikra Khan, Maria Grazia Vigliot...
ACSD
2008
IEEE
130views Hardware» more  ACSD 2008»
13 years 10 months ago
BAM: BioAmbient machine
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...
CMSB
2009
Springer
13 years 11 months ago
Dynamic Compartments in the Imperative pi-Calculus
Dynamic compartments with mutable configurations and variable volumes are of basic interest for the stochastic modeling of biochemistry in cells. We propose a new language to expr...
Mathias John, Cédric Lhoussaine, Joachim Ni...
ENTCS
2007
114views more  ENTCS 2007»
13 years 4 months ago
Active Evaluation Contexts for Reaction Semantics
In the context of process algebras it is customary to define semantics in the form of a reaction relation supported by a structural congruence relation. Recently process algebras...
Henrik Pilegaard, Flemming Nielson, Hanne Riis Nie...