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BMCBI
2007
131views more  BMCBI 2007»
13 years 5 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
KDD
2009
ACM
243views Data Mining» more  KDD 2009»
14 years 6 months ago
Exploiting Wikipedia as external knowledge for document clustering
In traditional text clustering methods, documents are represented as "bags of words" without considering the semantic information of each document. For instance, if two ...
Xiaohua Hu, Xiaodan Zhang, Caimei Lu, E. K. Park, ...
ICDE
2009
IEEE
118views Database» more  ICDE 2009»
14 years 16 days ago
An Incremental Threshold Method for Continuous Text Search Queries
Abstract—A text filtering system monitors a stream of incoming documents, to identify those that match the interest profiles of its users. The user interests are registered at ...
Kyriakos Mouratidis, HweeHwa Pang
BMCBI
2005
121views more  BMCBI 2005»
13 years 5 months ago
Automated methods of predicting the function of biological sequences using GO and BLAST
Background: With the exponential increase in genomic sequence data there is a need to develop automated approaches to deducing the biological functions of novel sequences with hig...
Craig E. Jones, Ute Baumann, Alfred L. Brown
BMCBI
2004
144views more  BMCBI 2004»
13 years 5 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...