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BIOINFORMATICS
2010
92views more  BIOINFORMATICS 2010»
13 years 5 months ago
A computational genomics pipeline for prokaryotic sequencing projects
Andrey Kislyuk, Lee S. Katz, Sonia Agrawal, Matthe...
BMCBI
2008
152views more  BMCBI 2008»
13 years 5 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
BMCBI
2005
116views more  BMCBI 2005»
13 years 5 months ago
A computational approach for identifying pathogenicity islands in prokaryotic genomes
Background: Pathogenicity islands (PAIs), distinct genomic segments of pathogens encoding virulence factors, represent a subgroup of genomic islands (GIs) that have been acquired ...
Sung Ho Yoon, Cheol-Goo Hur, Ho-Young Kang, Yeoun ...
BMCBI
2010
122views more  BMCBI 2010»
13 years 5 months ago
Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes
Background: Our current understanding of transcription factor binding sites (TFBSs) in sequenced prokaryotic genomes is very limited due to the lack of an accurate and efficient c...
Shaoqiang Zhang, Shan Li, Phuc T. Pham, Zhengchang...
NAR
2011
238views Computer Vision» more  NAR 2011»
13 years 6 days ago
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes
COMBREX (http://combrex.bu.edu) is a project to increase the speed of the functional annotation of new bacterial and archaeal genomes. It consists of a database of functional pred...
Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, Jo...