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CORR
2010
Springer
144views Education» more  CORR 2010»
13 years 4 months ago
CLP-based protein fragment assembly
Abstract. The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments ar...
Alessandro Dal Palù, Agostino Dovier, Feder...
RECOMB
2002
Springer
14 years 4 months ago
Revealing protein structures: a new method for mapping antibody epitopes
A recent idea for determining the three-dimensional structure of a protein uses antibody recognition of surface structure and random peptide libraries to map antibody epitope comb...
Brendan Mumey, Brian W. Bailey, Edward A. Dratz
KDD
2009
ACM
175views Data Mining» more  KDD 2009»
13 years 9 months ago
Multi-class protein fold recognition using large margin logic based divide and conquer learning
Inductive Logic Programming (ILP) systems have been successfully applied to solve complex problems in bioinformatics by viewing them as binary classification tasks. It remains an...
Huma Lodhi, Stephen Muggleton, Michael J. E. Stern...
BMCBI
2010
156views more  BMCBI 2010»
13 years 4 months ago
Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
Background: High-throughput methods for detecting protein-protein interactions enable us to obtain large interaction networks, and also allow us to computationally identify the as...
Yosuke Ozawa, Rintaro Saito, Shigeo Fujimori, Hisa...