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BMCBI
2010
189views more  BMCBI 2010»
13 years 6 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
DCC
2000
IEEE
13 years 10 months ago
RD-Optimization of Hierarchical Structured Adaptive Vector Quantization for Video Coding
This paper contains two contributions to very-low-bitrate video coding. First, we show that in contrast to common practice incremental techniques for rate-distortion optimization ...
Marcel Wagner, Dietmar Saupe
ICALP
2011
Springer
12 years 9 months ago
Clique Clustering Yields a PTAS for max-Coloring Interval Graphs
We are given an interval graph G = (V, E) where each interval I ∈ V has a weight wI ∈ R+. The goal is to color the intervals V with an arbitrary number of color classes C1, C2...
Tim Nonner
BMCBI
2004
111views more  BMCBI 2004»
13 years 5 months ago
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
Background: Transcriptional regulation of cellular functions is carried out through a complex network of interactions among transcription factors and the promoter regions of genes...
Radu Dobrin, Qasim K. Beg, Albert-Lászl&oac...
BMCBI
2007
111views more  BMCBI 2007»
13 years 6 months ago
Modular co-evolution of metabolic networks
Background: The architecture of biological networks has been reported to exhibit high level of modularity, and to some extent, topological modules of networks overlap with known f...
Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Ha...