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CCGRID
2005
IEEE
13 years 11 months ago
A grid-based system for microbial genome comparison and analysis
Genome comparison and analysis can reveal the structures and functions of genome sequences of different species. As more genomes are sequenced, genomic data sources are rapidly in...
Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. L...
BIOINFORMATICS
2012
11 years 7 months ago
SSuMMo: rapid analysis, comparison and visualization of microbial communities
Motivation: Next-generation sequencing methods are generating increasingly massive datasets, yet still do not fully capture genetic diversity in the richest environments. To under...
Alex L. B. Leach, James P. J. Chong, Kelly R. Rede...
BMCBI
2004
211views more  BMCBI 2004»
13 years 5 months ago
GenomeViz: visualizing microbial genomes
Background: An increasing number of microbial genomes are being sequenced and deposited in public databases. In addition, several closely related strains are also being sequenced ...
Rohit Ghai, Torsten Hain, Trinad Chakraborty
VLDB
2005
ACM
140views Database» more  VLDB 2005»
13 years 10 months ago
The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management
Biological data management includes the traditional areas of data generation, acquisition, modelling, integration, and analysis. Although numerous academic biological data managem...
Victor M. Markowitz, Frank Korzeniewski, Krishna P...
BMCBI
2008
152views more  BMCBI 2008»
13 years 5 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...