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BMCBI
2006
129views more  BMCBI 2006»
13 years 4 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
IDA
2003
Springer
13 years 10 months ago
Similarity-Based Neural Networks for Applications in Computational Molecular Biology
This paper presents an alternative to distance-based neural networks. A distance measure is the underlying property on which many neural models rely, for example self-organizing ma...
Igor Fischer
VLDB
1990
ACM
74views Database» more  VLDB 1990»
13 years 9 months ago
Query Processing for Distance Metrics
In applications such as vision and molecular biology, a common problem is to find the similar objects to a given target (according to some distance measure) in a large database. T...
Jason Tsong-Li Wang, Dennis Shasha
BMCBI
2006
136views more  BMCBI 2006»
13 years 4 months ago
Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression
Background: The recent advancement of microarray technology with lower noise and better affordability makes it possible to determine expression of several thousand genes simultane...
Raja Loganantharaj, Satish Cheepala, John Clifford
BMCBI
2007
153views more  BMCBI 2007»
13 years 4 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...