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BMCBI
2008
184views more  BMCBI 2008»
13 years 5 months ago
Integrating protein-protein interactions and text mining for protein function prediction
Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...
CORR
2004
Springer
124views Education» more  CORR 2004»
13 years 5 months ago
On the existence of stable models of non-stratified logic programs
In this paper we analyze the relationship between cyclic definitions and consistency in GelfondLifschitz's answer sets semantics (initially defined as `stable model semantics...
Stefania Costantini
ESA
1993
Springer
109views Algorithms» more  ESA 1993»
13 years 9 months ago
Optimal Upward Planarity Testing of Single-Source Digraphs
A digraph is upward planar if it has a planar drawing such that all the edges are monotone with respect to the vertical direction. Testing upward planarity and constructing upward ...
Paola Bertolazzi, Giuseppe Di Battista, Carlo Mann...
BMCBI
2010
214views more  BMCBI 2010»
13 years 5 months ago
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Background: Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the under...
Aaron M. Newman, James B. Cooper
BMCBI
2010
86views more  BMCBI 2010»
13 years 5 months ago
Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective
Background: A protein binding hot spot is a small cluster of residues tightly packed at the center of the interface between two interacting proteins. Though a hot spot constitutes...
Qian Liu, Jinyan Li