14 search results - page 1 / 3 » A new distance for high level RNA secondary structure compar... |
CORR
2008
Springer
13 years 5 months ago
2008
Springer
We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two new operations, called node fusion and edge fusion, besides the t...
SPE
2008
13 years 4 months ago
2008
composed of various graphs linked together by relations of abstraction/refinement. The new structure is useful for representing information that can be described at t levels of abs...
BMCBI
2008
13 years 5 months ago
2008
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
SPIRE
2005
Springer
13 years 10 months ago
2005
Springer
Abstract. We introduce a new data structure, called MiGaL for “Multiple Graph Layers”, that is composed of various graphs linked together ions of abstraction/refinement. The n...
IPPS
2009
IEEE
13 years 11 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...