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BMCBI
2005
156views more  BMCBI 2005»
13 years 4 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer
ISB
2002
112views more  ISB 2002»
13 years 3 months ago
High quality visualization of biochemical pathways in BioPath
ABSTRACT: Biochemical reactions form large and complex networks. Comprehensible visual representations of these networks help biochemists understand the relationships between the c...
Falk Schreiber
BMCBI
2010
232views more  BMCBI 2010»
13 years 4 months ago
LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB
Background: Biochemical networks play an essential role in systems biology. Rapidly growing network data and e research activities call for convenient visualization tools to aid i...
Sheng He, Juan Mei, Guiyang Shi, Zhengxiang Wang, ...
BMCBI
2004
323views more  BMCBI 2004»
13 years 4 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
BIOSYSTEMS
2008
130views more  BIOSYSTEMS 2008»
13 years 4 months ago
Biological networks in metabolic P systems
The metabolic P algorithm is a procedure which determines, in a biochemically realistic way, the evolution of P systems representing biological phenomena. A new formulation of thi...
Vincenzo Manca, Luca Bianco