12 search results - page 2 / 3 » A new method for indexing genomes using on-disk suffix trees |
DCC
2008
IEEE
14 years 4 months ago
2008
IEEE
Recent advances in compressed data structures have led to the new concept of self-indexing; it is possible to represent a sequence of symbols compressed in a form that enables fas...
BMCBI
2008
13 years 4 months ago
2008
Background: Analysis of sequence composition is a routine task in genome research. Organisms are characterized by their base composition, dinucleotide relative abundance, codon us...
BMCBI
2006
13 years 4 months ago
2006
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
RECOMB
2005
Springer
14 years 4 months ago
2005
Springer
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
ICML
2005
IEEE
14 years 5 months ago
2005
IEEE
In genomic sequence analysis tasks like splice site recognition or promoter identification, large amounts of training sequences are available, and indeed needed to achieve suffici...