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    SASP
    2009
    IEEE
    291views Hardware» more  SASP 2009»
    A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
    13 years 11 months ago
    A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
    Download  www.see.ed.ac.uk
    —This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
    Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
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    BMCBI
    2011
    273views Artificial Intelligence» more  BMCBI 2011»
    Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
    12 years 8 months ago
    Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
    Download  www.biomedcentral.com
    Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
    Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
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