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BMCBI
2005
178views more  BMCBI 2005»
13 years 4 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
BMCBI
2007
139views more  BMCBI 2007»
13 years 4 months ago
Significance analysis of microarray transcript levels in time series experiments
Background: Microarray time series studies are essential to understand the dynamics of molecular events. In order to limit the analysis to those genes that change expression over ...
Barbara Di Camillo, Gianna Toffolo, Sreekumaran K....
BMCBI
2007
144views more  BMCBI 2007»
13 years 4 months ago
Spectral estimation in unevenly sampled space of periodically expressed microarray time series data
Background: Periodogram analysis of time-series is widespread in biology. A new challenge for analyzing the microarray time series data is to identify genes that are periodically ...
Alan Wee-Chung Liew, Jun Xian, Shuanhu Wu, David K...
IJON
2007
118views more  IJON 2007»
13 years 4 months ago
CATS benchmark time series prediction by Kalman smoother with cross-validated noise density
This article presents the winning solution to the CATS time series prediction competition. The solution is based on classical optimal linear estimation theory. The proposed method...
Simo Särkkä, Aki Vehtari, Jouko Lampinen
ICDM
2008
IEEE
160views Data Mining» more  ICDM 2008»
13 years 10 months ago
Direct Zero-Norm Optimization for Feature Selection
Zero-norm, defined as the number of non-zero elements in a vector, is an ideal quantity for feature selection. However, minimization of zero-norm is generally regarded as a combi...
Kaizhu Huang, Irwin King, Michael R. Lyu