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» A query language for biological networks
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EDBT
2009
ACM
241views Database» more  EDBT 2009»
14 years 25 days ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang
JMLR
2012
11 years 8 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
KES
2010
Springer
13 years 4 months ago
Talking Biology in Logic, and Back
While computation of biological information takes center stage in today’s research, knowledge-based query processing in biological databases has not gained much attention. The co...
Hasan Jamil
ICDE
2012
IEEE
240views Database» more  ICDE 2012»
11 years 8 months ago
Ego-centric Graph Pattern Census
—There is increasing interest in analyzing networks of all types including social, biological, sensor, computer, and transportation networks. Broadly speaking, we may be interest...
Walaa Eldin Moustafa, Amol Deshpande, Lise Getoor
TREC
2007
13 years 7 months ago
Passage Relevancy Through Semantic Relatedness
Questions that require answers in the form of a list of entities and the identification of diverse biological entity classes present an interesting challenge that required new app...
Luis Tari, Phan Huy Tu, Barry Lumpkin, Robert Leam...