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» AAindex: Amino Acid index database
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NAR
2008
112views more  NAR 2008»
13 years 4 months ago
AAindex: amino acid index database, progress report 2008
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of p...
Shuichi Kawashima, Piotr Pokarowski, Maria Pokarow...
NAR
2000
108views more  NAR 2000»
13 years 4 months ago
AAindex: Amino Acid index database
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AA...
Shuichi Kawashima, Minoru Kanehisa
BMCBI
2006
129views more  BMCBI 2006»
13 years 4 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
NAR
1998
88views more  NAR 1998»
13 years 4 months ago
SV40 large tumor antigen (T antigen): database of mutants
The SV40 T antigen database (http://www.pitt.edu/ ∼pipaslab/ ) lists viruses and plasmids expressing mutant forms of large T antigen. Each entry contains information regarding t...
Clifford G. Robinson, James M. Pipas
CANDC
2006
ACM
13 years 4 months ago
Domain boundary prediction based on profile domain linker propensity index
Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multidomain proteins but also for the exper...
Qiwen Dong, Xiaolong Wang, Lei Lin, Zhiming Xu