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BMCBI
2005
94views more  BMCBI 2005»
13 years 5 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
COST
2008
Springer
122views Multimedia» more  COST 2008»
13 years 7 months ago
Articulatory Speech Re-synthesis: Profiting from Natural Acoustic Speech Data
The quality of static phones (e.g. vowels, fricatives, nasals, laterals) generated by articulatory speech synthesizers has reached a high level in the last years. Our goal is to ex...
Dominik Bauer, Jim Kannampuzha, Bernd J. Krög...
BMCBI
2008
123views more  BMCBI 2008»
13 years 5 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2006
141views more  BMCBI 2006»
13 years 5 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
BMCBI
2006
158views more  BMCBI 2006»
13 years 5 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...