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BMCBI
2010
123views more  BMCBI 2010»
13 years 24 days ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
BMCBI
2011
13 years 24 days ago
Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
Background: Methods of determining whether or not any particular HIV-1 sequence stems - completely or in part - from some unknown HIV-1 subtype are important for the design of vac...
Thomas Unterthiner, Anne-Kathrin Schultz, Jan Bull...
MICS
2010
128views more  MICS 2010»
13 years 16 days ago
Arrangements on Parametric Surfaces II: Concretizations and Applications
We describe the algorithms and implementation details involved in the concretizations of a generic framework that enables exact construction, maintenance, and manipulation of arran...
Eric Berberich, Efi Fogel, Dan Halperin, Michael K...
SIAMIS
2010
378views more  SIAMIS 2010»
13 years 15 days ago
Global Interactions in Random Field Models: A Potential Function Ensuring Connectedness
Markov random field (MRF) models, including conditional random field models, are popular in computer vision. However, in order to be computationally tractable, they are limited to ...
Sebastian Nowozin, Christoph H. Lampert
SIAMIS
2010
141views more  SIAMIS 2010»
13 years 15 days ago
Optimization by Stochastic Continuation
Simulated annealing (SA) and deterministic continuation are well-known generic approaches to global optimization. Deterministic continuation is computationally attractive but produ...
Marc C. Robini, Isabelle E. Magnin