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BMCBI
2006
156views more  BMCBI 2006»
13 years 5 months ago
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
Background: Horizontal gene transfer (HGT) is considered a strong evolutionary force shaping the content of microbial genomes in a substantial manner. It is the difference in spee...
Stephan Waack, Oliver Keller, Roman Asper, Thomas ...
BMCBI
2005
130views more  BMCBI 2005»
13 years 5 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
OR
2010
Springer
13 years 3 months ago
Modeling organic carbon and carbon-mediated soil processes in DSSAT v4.5
Cropping systems models have evolved over the last four decades in response to the demand for modeling to address more complex questions, including issues on sustainable productio...
Cheryl H. Porter, J. W. Jones, S. Adiku, A. J. Gij...
HPCA
2008
IEEE
14 years 5 months ago
Uncovering hidden loop level parallelism in sequential applications
As multicore systems become the dominant mainstream computing technology, one of the most difficult challenges the industry faces is the software. Applications with large amounts ...
Hongtao Zhong, Mojtaba Mehrara, Steven A. Lieberma...
BMCBI
2006
179views more  BMCBI 2006»
13 years 5 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...