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» Advanced Query Mechanisms for Biological Databases
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APWEB
2007
Springer
13 years 8 months ago
DBMSs with Native XML Support: Towards Faster, Richer, and Smarter Data Management
Abstract. XML provides a natural mechanism for representing semistructured and unstructured data. It becomes the basis for encoding a large variety of information, for example, the...
Min Wang
NAR
2008
125views more  NAR 2008»
13 years 4 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
BMCBI
2008
150views more  BMCBI 2008»
13 years 4 months ago
Natural Language Processing in aid of FlyBase curators
Background: Despite increasing interest in applying Natural Language Processing (NLP) to biomedical text, whether this technology can facilitate tasks such as database curation re...
Nikiforos Karamanis, Ruth Seal, Ian Lewin, Peter M...
BMCBI
2008
118views more  BMCBI 2008»
13 years 4 months ago
PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
Csaba P. Ortutay, Mauno Vihinen
BMCBI
2010
113views more  BMCBI 2010»
13 years 4 months ago
Use of historic metabolic biotransformation data as a means of anticipating metabolic sites using MetaPrint2D and Bioclipse
Background: Predicting metabolic sites is important in the drug discovery process to aid in rapid compound optimisation. No interactive tool exists and most of the useful tools ar...
Lars Carlsson, Ola Spjuth, Samuel Adams, Robert C....