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» Amino-Acid Substitutions In Membrane Proteins: Applications ...
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BMCBI
2005
125views more  BMCBI 2005»
13 years 4 months ago
Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling
ent> <title><p>BioSysBio: Bioinformatics and Systems Biology Conference</p></title> <note>Meeting abstracts
Younes Mokrab, Kenji Mizuguchi
BMCBI
2008
130views more  BMCBI 2008»
13 years 4 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
13 years 10 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
BMCBI
2011
12 years 11 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
BMCBI
2008
86views more  BMCBI 2008»
13 years 4 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu