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    BMCBI
    2005
    162views more  BMCBI 2005»
    Accelerated probabilistic inference of RNA structure evolution
    13 years 5 months ago
    Accelerated probabilistic inference of RNA structure evolution
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    Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
    Ian Holmes
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    BMCBI
    2005
    152views more  BMCBI 2005»
    Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
    13 years 5 months ago
    Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
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    Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
    Markus Wistrand, Erik L. L. Sonnhammer
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    ANOR
    2002
    99views more  ANOR 2002»
    An Inventory-Location Model: Formulation, Solution Algorithm and Computational Results
    13 years 5 months ago
    An Inventory-Location Model: Formulation, Solution Algorithm and Computational Results
    Download  www.ieor.berkeley.edu
    We introduce a distribution center (DC) location model that incorporates working inventory and safety stock inventory costs at the distribution centers. In addition, the model inco...
    Mark S. Daskin, Collette R. Coullard, Zuo-Jun Max ...
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    BMCBI
    2004
    123views more  BMCBI 2004»
    A two-way interface between limited Systems Biology Markup Language and R
    13 years 5 months ago
    A two-way interface between limited Systems Biology Markup Language and R
    Download  www.biomedcentral.com
    Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
    Tomas Radivoyevitch
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    BMCBI
    2002
    126views more  BMCBI 2002»
    RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
    13 years 5 months ago
    RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
    Download  www.biomedcentral.com
    Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
    Christian M. Zmasek, Sean R. Eddy
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