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» An Approximation Algorithm for Alphabet Indexing Problem
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IFIPTCS
2000
13 years 9 months ago
An Index for Two Dimensional String Matching Allowing Rotations
We present an index to search a two-dimensional pattern of size m m in a two-dimensional text of size n n, even when the pattern appears rotated in the text. The index is based on ...
Kimmo Fredriksson, Gonzalo Navarro, Esko Ukkonen
CPM
2005
Springer
116views Combinatorics» more  CPM 2005»
13 years 11 months ago
Exact and Approximation Algorithms for DNA Tag Set Design
In this paper we propose new solution methods for designing tag sets for use in universal DNA arrays. First, we give integer linear programming formulations for two previous formal...
Ion I. Mandoiu, Dragos Trinca
CPM
2009
Springer
121views Combinatorics» more  CPM 2009»
13 years 12 months ago
LCS Approximation via Embedding into Local Non-repetitive Strings
A classical measure of similarity between strings is the length of the longest common subsequence(LCS) between the two given strings. The search for efficient algorithms for findi...
Gad M. Landau, Avivit Levy, Ilan Newman
SWAT
2004
Springer
98views Algorithms» more  SWAT 2004»
13 years 10 months ago
Tight Approximability Results for Test Set Problems in Bioinformatics
In this paper, we investigate the test set problem and its variations that appear in a variety of applications. In general, we are given a universe of objects to be “distinguish...
Piotr Berman, Bhaskar DasGupta, Ming-Yang Kao
FSTTCS
2000
Springer
13 years 9 months ago
Text Sparsification via Local Maxima
In this paper we investigate some properties and algorithms related to a text sparsification technique based on the identification of local maxima in the given string. As the numb...
Pierluigi Crescenzi, Alberto Del Lungo, Roberto Gr...