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RECOMB
2010
Springer
13 years 1 months ago
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
(Motivation) Tree reconciliation is an approach that explains the discrepancies between two evolutionary trees by a number of events such as speciations, duplications, transfers an...
Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Go...
RECOMB
2009
Springer
14 years 4 months ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk
BMCBI
2010
135views more  BMCBI 2010»
13 years 3 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
BMCBI
2010
108views more  BMCBI 2010»
13 years 3 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
BMCBI
2010
135views more  BMCBI 2010»
13 years 3 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas