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» An Evidence Ontology for Use in Pathway Genome Databases
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PSB
2004
13 years 6 months ago
An Evidence Ontology for Use in Pathway/Genome Databases
An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
Peter D. Karp, Suzanne M. Paley, Cynthia J. Kriege...
BMCBI
2005
122views more  BMCBI 2005»
13 years 4 months ago
Finding genomic ontology terms in text using evidence content
Background: The development of text mining systems that annotate biological entities with their properties using scientific literature is an important recent research topic. These...
Francisco M. Couto, Mário J. Silva, Pedro C...
NAR
2006
177views more  NAR 2006»
13 years 4 months ago
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways
The PUMA2 system (available at http://compbio.mcs. 10 anl.gov/puma2) is an interactive, integrated bioinformatics environment for high-throughput genetic sequence analysis and met...
Natalia Maltsev, Elizabeth M. Glass, Dinanath Sula...
APWEB
2006
Springer
13 years 8 months ago
Web-Based Genomic Information Integration with Gene Ontology
Despite the dramatic growth of online genomic data, their understanding is still in early stage. To have meaningful interpretation, it requires the integration of various types of ...
Kai Xu
BMCBI
2010
115views more  BMCBI 2010»
13 years 4 months ago
Machine learning methods for metabolic pathway prediction
Background: A key challenge in systems biology is the reconstruction of an organism's metabolic network from its genome sequence. One strategy for addressing this problem is ...
Joseph M. Dale, Liviu Popescu, Peter D. Karp