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ESA
2008
Springer
106views Algorithms» more  ESA 2008»
13 years 6 months ago
An Experimental Analysis of Robinson-Foulds Distance Matrix Algorithms
In this paper, we study two fast algorithms--HashRF and PGM-Hashed--for computing the Robinson-Foulds (RF) distance matrix between a collection of evolutionary trees. The RF distan...
Seung-Jin Sul, Tiffani L. Williams
BMCBI
2010
135views more  BMCBI 2010»
13 years 4 months ago
MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees
Background: MapReduce is a parallel framework that has been used effectively to design largescale parallel applications for large computing clusters. In this paper, we evaluate th...
Suzanne Matthews, Tiffani L. Williams
SISAP
2010
IEEE
243views Data Mining» more  SISAP 2010»
13 years 2 months ago
Similarity matrix compression for efficient signature quadratic form distance computation
Determining similarities among multimedia objects is a fundamental task in many content-based retrieval, analysis, mining, and exploration applications. Among state-of-the-art sim...
Christian Beecks, Merih Seran Uysal, Thomas Seidl
TIT
2010
144views Education» more  TIT 2010»
12 years 11 months ago
Lossy source compression using low-density generator matrix codes: analysis and algorithms
We study the use of low-density generator matrix (LDGM) codes for lossy compression of the Bernoulli symmetric source. First, we establish rigorous upper bounds on the average dist...
Martin J. Wainwright, Elitza N. Maneva, Emin Marti...
PR
1998
86views more  PR 1998»
13 years 4 months ago
Optimizing the cost matrix for approximate string matching using genetic algorithms
This paper describes a method for optimizing the cost matrix of any approximate string matching algorithm based on the Levenshtein distance. The method, which uses genetic algorit...
Marc Parizeau, Nadia Ghazzali, Jean-Françoi...