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ENTCS
2008
98views more  ENTCS 2008»
13 years 5 months ago
An Intermediate Language for the Simulation of Biological Systems
We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be t...
Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo...
VRML
2004
ACM
13 years 10 months ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...
FDL
2011
IEEE
12 years 4 months ago
Integrating system descriptions by clocked guarded actions
—For the description of reactive systems, there is a large number of languages and formalisms, and depending on a particular application or design phase, one of them may be bette...
Jens Brandt, Mike Gemunde, Klaus Schneider, Sandee...
KBSE
2003
IEEE
13 years 10 months ago
Semi-Automatic Fault Localization and Behavior Verification for Physical System Simulation Models
Mathematical modeling and simulation of complex physical systems are emerging as key technologies in engineering. Modern approaches to physical system simulation allow users to sp...
Peter Bunus, Peter Fritzson
ENTCS
2007
91views more  ENTCS 2007»
13 years 4 months ago
Timed Concurrent Constraint Programming for Analysing Biological Systems
In this paper we present our rst approach to model and verify biological systems using ntcc, a concurrent constraint process calculus. We argue that the partial information const...
Julian Gutierrez, Jorge A. Pérez, Camilo Ru...